If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 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=> 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 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=> 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 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=> 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 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=> 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 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=> 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 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=> 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 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=> 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 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=> 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 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=> 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 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=> 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 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=> 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 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=> 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 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=> 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 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=> 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 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=> 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 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=> 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 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=> 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 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=> 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 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=> 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 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=> 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 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=> 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 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=> 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 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=> 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 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=> 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 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=> 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 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=> 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 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=> 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 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=> 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 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=> 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 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=> 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ), 'gf_id' => 'HOM05D000857', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000857' ), 'data_identifier' => 'HOM05D000857', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000857', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33750' => 'bna', 'A03p44590' => 'bna', 'A03p48590' => 'bna', 'A03p64690' => 'bna', 'A04p07350' => 'bna', 'A05p27620' => 'bna', 'A07p06490' => 'bna', 'A09p45040' => 'bna', 'A10p25390' => 'bna', 'Aa31LG10G17300' => 'aar', 'Aa31LG10G3240' => 'aar', 'Aa31LG10G7010' => 'aar', 'Aa31LG3G14800' => 'aar', 'Aa31LG8G7810' => 'aar', 'Aa31sc205G30' => 'aar', 'Actinidia00092' => 'ach', 'Actinidia02251' => 'ach', 'Actinidia05031' => 'ach', 'Actinidia06284' => 'ach', 'Actinidia06927' => 'ach', 'Actinidia11669' => 'ach', 'Actinidia16348' => 'ach', 'Actinidia19431' => 'ach', 'Actinidia21446' => 'ach', 'Actinidia21531' => 'ach', 'Actinidia23980' => 'ach', 'Ah.04g166450' => 'amhyb', 'Ah.06g193870' => 'amhyb', 'Ah.12g065230' => 'amhyb', 'AL1G59410' => 'aly', 'AL1G59420' => 'aly', 'AL3G35040' => 'aly', 'AL3G42760' => 'aly', 'AL5G32460' => 'aly', 'AL5G33790' => 'aly', 'AL5G46310' => 'aly', 'AL6G23260' => 'aly', 'Aqoxy1G00018' => 'aox', 'Aqoxy2G00020' => 'aox', 'Aqoxy4G02216' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5A3FI2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z3R8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97J55U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9UPH40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD2M5U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E3GXPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2MMBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H764QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KYG6ZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQ4J84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SAS3Z5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UVE8C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W4JVCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ06WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5Q5RE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XV5AQQ' => 'arhy', 'AT1G51520' => 'ath', 'AT1G51530' => 'ath', 'AT2G05160' => 'ath', 'AT3G21100' => 'ath', 'AT3G51950' => 'ath', 'AT3G52980' => 'ath', 'AT3G63450' => 'ath', 'AT5G12440' => 'ath', 'ATR0068G117' => 'atr', 'ATR1149G154' => 'atr', 'Atru.chr11.2556' => 'acertr', 'Atru.chr2.3604' => 'acertr', 'Atru.chr3.2642' => 'acertr', 'Atru.chr3.2643' => 'acertr', 'Atru.chr6.3372' => 'acertr', 'AUR62000153' => 'cqu', 'AUR62015061' => 'cqu', 'AUR62017061' => 'cqu', 'AUR62017518' => 'cqu', 'AUR62018338' => 'cqu', 'AUR62030545' => 'cqu', 'AUR62039862' => 'cqu', 'AUR62040656' => 'cqu', 'BcaB01g00397' => 'bca', 'BcaB01g00458' => 'bca', 'BcaB02g08594' => 'bca', 'BcaB04g20612' => 'bca', 'BcaB06g26176' => 'bca', 'BcaB06g26828' => 'bca', 'BcaB08g34497' => 'bca', 'BcaB08g37003' => 'bca', 'BcaC01g03176' => 'bca', 'BcaC02g09289' => 'bca', 'BcaC05g28224' => 'bca', 'BcaC05g30443' => 'bca', 'BcaC06g33018' => 'bca', 'BcaC06g33364' => 'bca', 'BcaC06g35913' => 'bca', 'BcaC08g43318' => 'bca', 'BcaC09g49050' => 'bca', 'BolC1t04260H' => 'bol', 'BolC3t13164H' => 'bol', 'BolC3t17810H' => 'bol', 'BolC4t25679H' => 'bol', 'BolC5t33026H' => 'bol', 'BolC6t35779H' => 'bol', 'BolC7t41417H' => 'bol', 'BolC7t45187H' => 'bol', 'BolC8t50338H' => 'bol', 'BolC8t50339H' => 'bol', 'BolC9t59280H' => 'bol', 'BraA01t03488Z' => 'bra', 'BraA03t09902Z' => 'bra', 'BraA03t13591Z' => 'bra', 'BraA03t13964Z' => 'bra', 'BraA03t15534Z' => 'bra', 'BraA04t16430Z' => 'bra', 'BraA05t21652Z' => 'bra', 'BraA06t23451Z' => 'bra', 'BraA06t25270Z' => 'bra', 'BraA07t28441Z' => 'bra', 'BraA09t39965Z' => 'bra', 'BraA10t44603Z' => 'bra', 'C01p43130' => 'bna', 'C03p06580' => 'bna', 'C03p55380' => 'bna', 'C04p40960' => 'bna', 'C05p42960' => 'bna', 'C07p09780' => 'bna', 'C07p46710' => 'bna', 'C08p27220' => 'bna', 'C08p27230' => 'bna', 'C09p64450' => 'bna', 'CAN.G337.26' => 'can', 'CAN.G410.10' => 'can', 'CAN.G494.2' => 'can', 'CAN.G64.27' => 'can', 'CAN.G76.3' => 'can', 'CAN.G854.6' => 'can', 'CANSAT11G2094' => 'cansat', 'CANSAT64G2509' => 'cansat', 'CANSAT80G1768' => 'cansat', 'CARHR041680' => 'chi', 'CARHR096930' => 'chi', 'CARHR103030' => 'chi', 'CARHR161580' => 'chi', 'CARHR200660' => 'chi', 'CARHR291520' => 'chi', 'Carub.0001s4037' => 'cru', 'Carub.0001s4038' => 'cru', 'Carub.0003s2100' => 'cru', 'Carub.0003s2667' => 'cru', 'Carub.0005s1830' => 'cru', 'Carub.0005s1948' => 'cru', 'Carub.0006s1095' => 'cru', 'Carub.0043s0005' => 'cru', 'Ca_06375_v3' => 'car', 'Ca_14188_v3' => 'car', 'Ca_20156_v3' => 'car', 'Ca_24488_v3' => 'car', 'Ca_24489_v3' => 'car', 'Ca_26763_v3' => 'car', 'CBR_g12241' => 'cbr', 'CBR_g23909' => 'cbr', 'Cc01_g05070' => 'ccan', 'Cc05_g14720' => 'ccan', 'CDE02G2503' => 'cde', 'CDE04G2804' => 'cde', 'CDE10G0070' => 'cde', 'CDE10G1328' => 'cde', 'Cfa010835' => 'cfa', 'Cfa014234' => 'cfa', 'Cfa020228' => 'cfa', 'Ciclev10007876m.g' => 'ccl', 'Ciclev10014515m.g' => 'ccl', 'Ciclev10014902m.g' => 'ccl', 'Ciclev10018237m.g' => 'ccl', 'Ciclev10030728m.g' => 'ccl', 'CiPaw.03G280600' => 'cil', 'CiPaw.04G196800' => 'cil', 'CiPaw.11G201100' => 'cil', 'CiPaw.12G132900' => 'cil', 'CiPaw.12G136100' => 'cil', 'CiPaw.13G009000' => 'cil', 'CiPaw.13G154600' => 'cil', 'CiPaw.13G154700' => 'cil', 'CiPaw.14G004700' => 'cil', 'CiPaw.14G116500' => 'cil', 'CiPaw.14G116600' => 'cil', 'ClCG01G008170' => 'cla', 'ClCG02G013970' => 'cla', 'ClCG03G013020' => 'cla', 'ClCG10G004560' => 'cla', 'COL.COLO4_09788' => 'col', 'COL.COLO4_19331' => 'col', 'COL.COLO4_33357' => 'col', 'COL.COLO4_36466' => 'col', 'COL.COLO4_36467' => 'col', 'Cpa.g.sc12.190' => 'cpa', 'Cpa.g.sc197.24' => 'cpa', 'Cpa.g.sc211.14' => 'cpa', 'Cpa.g.sc84.22' => 'cpa', 'Cpa.g.sc84.23' => 'cpa', 'Cpa.g.sc84.25' => 'cpa', 'CsaV3_1G043040' => 'csa', 'CsaV3_3G004380' => 'csa', 'CsaV3_5G006190' => 'csa', 'CsaV3_5G020110' => 'csa', 'CSS0000105' => 'camsi', 'CSS0004029' => 'camsi', 'CSS0005188' => 'camsi', 'CSS0019773' => 'camsi', 'CSS0029831' => 'camsi', 'CSS0035114' => 'camsi', 'CSS0036859' => 'camsi', 'CSS0037754' => 'camsi', 'CSS0042101' => 'camsi', 'CSS0046347' => 'camsi', 'CSS0049809' => 'camsi', 'DCAR_012905' => 'dca', 'DCAR_019233' => 'dca', 'DCAR_022365' => 'dca', 'DCAR_023764' => 'dca', 'DCAR_031817' => 'dca', 'Dinv05552' => 'din', 'Dinv07417' => 'din', 'Dinv07861' => 'din', 'Dinv09622' => 'din', 'Dinv10314' => 'din', 'Dinv13978' => 'din', 'Dinv16362' => 'din', 'Dinv22159' => 'din', 'Dinv36232' => 'din', 'Dinv40836' => 'din', 'Duzib106G0205' => 'dzi', 'Duzib114G0023' => 'dzi', 'Duzib128G0003' => 'dzi', 'Duzib133G0457' => 'dzi', 'Duzib138G0665' => 'dzi', 'Duzib150G0767' => 'dzi', 'Duzib150G1577' => 'dzi', 'Duzib170G0229' => 'dzi', 'Duzib170G0234' => 'dzi', 'Duzib213G1069' => 'dzi', 'Duzib268G0163' => 'dzi', 'Duzib268G0948' => 'dzi', 'ECA233G0185' => 'eca', 'ECA233G4975' => 'eca', 'ECA236G4235' => 'eca', 'ECA240G3854' => 'eca', 'ECA246G2388' => 'eca', 'ECA248G1049' => 'eca', 'EL10Ac2g02890' => 'bvu', 'EL10Ac4g07612' => 'bvu', 'EL10Ac4g10210' => 'bvu', 'EL10Ac6g13793' => 'bvu', 'Eucgr.F00620' => 'egr', 'Eucgr.G03273' => 'egr', 'Eucgr.J00738' => 'egr', 'Eucgr.J00741' => 'egr', 'Eucgr.K00655' => 'egr', 'FAN01G0815' => 'fan', 'FAN02G3440' => 'fan', 'FAN03G2958' => 'fan', 'FAN05G5791' => 'fan', 'FAN06G2197' => 'fan', 'FAN09G3536' => 'fan', 'FAN10G0667' => 'fan', 'FAN10G3857' => 'fan', 'FAN11G0294' => 'fan', 'FAN11G1341' => 'fan', 'FAN11G2789' => 'fan', 'FAN14G4135' => 'fan', 'FAN16G0720' => 'fan', 'FAN16G2230' => 'fan', 'FAN16G2761' => 'fan', 'FAN18G0933' => 'fan', 'FAN21G0184' => 'fan', 'FAN21G1063' => 'fan', 'FAN21G1822' => 'fan', 'FAN25G0021' => 'fan', 'FAN25G0233' => 'fan', 'FAN25G2526' => 'fan', 'FAN25G3797' => 'fan', 'FvH4_3g24070' => 'fve', 'FvH4_3g28410' => 'fve', 'FvH4_3g28430' => 'fve', 'FvH4_5g26190' => 'fve', 'FvH4_6g40900' => 'fve', 'FvH4_7g01970' => 'fve', 'Glyma.01G058800' => 'gma', 'Glyma.01G227200' => 'gma', 'Glyma.02G298000' => 'gma', 'Glyma.08G326000' => 'gma', 'Glyma.09G225600' => 'gma', 'Glyma.09G225700' => 'gma', 'Glyma.11G015600' => 'gma', 'Glyma.12G010800' => 'gma', 'Glyma.12G010900' => 'gma', 'Glyma.14G015700' => 'gma', 'Glyma.18G081000' => 'gma', 'Gohir.A01G087400' => 'ghi', 'Gohir.A04G009600' => 'ghi', 'Gohir.A06G158300' => 'ghi', 'Gohir.A07G123100' => 'ghi', 'Gohir.A09G112000' => 'ghi', 'Gohir.A09G112100' => 'ghi', 'Gohir.A11G149400' => 'ghi', 'Gohir.A13G012400' => 'ghi', 'Gohir.A13G217100' => 'ghi', 'Gohir.D01G073700' => 'ghi', 'Gohir.D05G378350' => 'ghi', 'Gohir.D06G164200' => 'ghi', 'Gohir.D07G127000' => 'ghi', 'Gohir.D09G108600' => 'ghi', 'Gohir.D09G108800' => 'ghi', 'Gohir.D11G156340' => 'ghi', 'Gohir.D13G013500' => 'ghi', 'Gohir.D13G220700' => 'ghi', 'Gorai.001G137100' => 'gra', 'Gorai.002G096600' => 'gra', 'Gorai.006G126300' => 'gra', 'Gorai.006G126400' => 'gra', 'Gorai.007G166600' => 'gra', 'Gorai.009G446200' => 'gra', 'Gorai.010G191400' => 'gra', 'Gorai.013G014500' => 'gra', 'Gorai.013G251700' => 'gra', 'GSVIVG01001467001' => 'vvi', 'GSVIVG01014663001' => 'vvi', 'GSVIVG01030048001' => 'vvi', 'GSVIVG01031538001' => 'vvi', 'GSVIVG01037782001' => 'vvi', 'HanXRQChr01g0021001' => 'han', 'HanXRQChr02g0051531' => 'han', 'HanXRQChr04g0114971' => 'han', 'HanXRQChr04g0114981' => 'han', 'HanXRQChr04g0126511' => 'han', 'HanXRQChr06g0174771' => 'han', 'HanXRQChr08g0235821' => 'han', 'HanXRQChr11g0328071' => 'han', 'HanXRQChr11g0341081' => 'han', 'HanXRQChr13g0401401' => 'han', 'HanXRQChr17g0544061' => 'han', 'Haze_03099' => 'cav', 'Haze_09789' => 'cav', 'Haze_12647' => 'cav', 'Haze_12648' => 'cav', 'Haze_22528' => 'cav', 'Haze_23176' => 'cav', 'Haze_23177' => 'cav', 'Hma1.2p1_0068F.1_g037260' => 'hma', 'Hma1.2p1_0579F.1_g182610' => 'hma', 'Hma1.2p1_1157F.1_g262370' => 'hma', 'Hma1.2p1_2796F.1_g328660' => 'hma', 'HPP92_000780' => 'vpl', 'HPP92_001634' => 'vpl', 'HPP92_001635' => 'vpl', 'HPP92_007572' => 'vpl', 'HPP92_007897' => 'vpl', 'HPP92_012562' => 'vpl', 'HPP92_014360' => 'vpl', 'HPP92_020397' => 'vpl', 'HPP92_026805' => 'vpl', 'Hund07467' => 'sun', 'Hund13300' => 'sun', 'Hund22002' => 'sun', 'Hund23127' => 'sun', 'Lalb_Chr01g0000551' => 'lal', 'Lalb_Chr01g0001111' => 'lal', 'Lalb_Chr01g0001121' => 'lal', 'Lalb_Chr01g0013791' => 'lal', 'Lalb_Chr03g0024161' => 'lal', 'Lalb_Chr03g0024531' => 'lal', 'Lalb_Chr04g0247961' => 'lal', 'Lalb_Chr09g0320401' => 'lal', 'Lalb_Chr09g0320411' => 'lal', 'Lalb_Chr10g0107321' => 'lal', 'Lalb_Chr19g0140181' => 'lal', 'Lj1A792G58' => 'lonja', 'Lj1A885T34' => 'lonja', 'Lj1A886T21' => 'lonja', 'Lj3g0011829' => 'lja', 'Lj3g0015211' => 'lja', 'Lj3g0023593' => 'lja', 'Lj6g0018510' => 'lja', 'Lj7A575G46' => 'lonja', 'Lj8A134T79' => 'lonja', 'Lj9A643T36' => 'lonja', 'LjContig00222g0018923' => 'lja', 'LjContig00272g0016751' => 'lja', 'Lsat_1_v5_gn_1_99660' => 'lsa', 'Lsat_1_v5_gn_2_30981' => 'lsa', 'Lsat_1_v5_gn_5_8081' => 'lsa', 'Lsat_1_v5_gn_6_25960' => 'lsa', 'Lsat_1_v5_gn_7_95520' => 'lsa', 'Lsat_1_v5_gn_8_121161' => 'lsa', 'Lsat_1_v5_gn_9_104521' => 'lsa', 'Manes.03G137751' => 'mes', 'Manes.03G137901' => 'mes', 'Manes.06G161900' => 'mes', 'Manes.06G162000' => 'mes', 'Manes.11G101600' => 'mes', 'Manes.12G065300' => 'mes', 'Manes.13G062600' => 'mes', 'Manes.14G004600' => 'mes', 'Manes.14G004700' => 'mes', 'Manes.15G062900' => 'mes', 'Mapoly0106s0048' => 'mpo', 'MBI11_g00139_MAGBIO' => 'mbi', 'MBI11_g00140_MAGBIO' => 'mbi', 'MBI11_g36933_MAGBIO' => 'mbi', 'MBI11_g36934_MAGBIO' => 'mbi', 'MBI11_g39362_MAGBIO' => 'mbi', 'MBI13_g36725_MAGBIO' => 'mbi', 'MBI16_g36321_MAGBIO' => 'mbi', 'MBI19_g25575_MAGBIO' => 'mbi', 'MD00G1177200' => 'mdo', 'MD02G1298200' => 'mdo', 'MD03G1171700' => 'mdo', 'MD03G1171800' => 'mdo', 'MD03G1188600' => 'mdo', 'MD07G1025800' => 'mdo', 'MD09G1123600' => 'mdo', 'MD09G1140400' => 'mdo', 'MD11G1189200' => 'mdo', 'MD11G1189300' => 'mdo', 'MD13G1017100' => 'mdo', 'MD17G1114400' => 'mdo', 'Medtr0005s0130' => 'mtr', 'Medtr3g056160' => 'mtr', 'Medtr3g436060' => 'mtr', 'Medtr4g043660' => 'mtr', 'Medtr5g008900' => 'mtr', 'Medtr5g094700' => 'mtr', 'MELO3C011738.2' => 'cme', 'MELO3C014131.2' => 'cme', 'MELO3C015164.2' => 'cme', 'MELO3C025056.2' => 'cme', 'Migut.D00629' => 'egut', 'Migut.D00630' => 'egut', 'Migut.M00029' => 'egut', 'Migut.M01674' => 'egut', 'Migut.N01811' => 'egut', 'Migut.N02345' => 'egut', 'MSTRG.12457' => 'ama', 'MSTRG.14926' => 'ama', 'MSTRG.17606' => 'ama', 'MSTRG.18444' => 'ama', 'MSTRG.21362' => 'ama', 'MSTRG.21363' => 'ama', 'MSTRG.5052' => 'ama', 'MSTRG.6646' => 'ama', 'MSTRG.6986' => 'ama', 'Nitab4.5_0000316g0380' => 'nta', 'Nitab4.5_0000441g0100' => 'nta', 'Nitab4.5_0000461g0090' => 'nta', 'Nitab4.5_0002187g0030' => 'nta', 'Nitab4.5_0003612g0040' => 'nta', 'Nitab4.5_0004642g0030' => 'nta', 'Nitab4.5_0004842g0030' => 'nta', 'Nitab4.5_0006123g0020' => 'nta', 'Nitab4.5_0007711g0020' => 'nta', 'Nitab4.5_0007817g0010' => 'nta', 'Nn1g04318' => 'nnu', 'Nn1g04319' => 'nnu', 'Nn1g05635' => 'nnu', 'Nn1g07443' => 'nnu', 'Nn261s45937' => 'nnu', 'Nn261s45938' => 'nnu', 'Nn2g15925' => 'nnu', 'Nn5g28392' => 'nnu', 'Oeu004148.1' => 'oeu', 'Oeu005491.1' => 'oeu', 'Oeu019607.1' => 'oeu', 'Oeu025888.3' => 'oeu', 'Oeu027359.3' => 'oeu', 'Oeu049462.3' => 'oeu', 'Oeu057085.2' => 'oeu', 'Oeu061306.1' => 'oeu', 'Os03g0328900' => 'osa', 'Os03g0329200' => 'osa', 'Os07g0583300' => 'osa', 'Os07g0583500' => 'osa', 'Os07g0682400' => 'osa', 'Os08g0126700' => 'osa', 'Os11g0125700' => 'osa', 'Os12g0123300' => 'osa', 'Peaxi162Scf00004g03412' => 'pax', 'Peaxi162Scf00032g00917' => 'pax', 'Peaxi162Scf00285g00823' => 'pax', 'Peaxi162Scf00776g00326' => 'pax', 'Peaxi162Scf01115g00013' => 'pax', 'PGR031G0265' => 'pgr', 'PGR083G1007' => 'pgr', 'PGR119G1652' => 'pgr', 'PGR142G1960' => 'pgr', 'PGSC0003DMG400006131' => 'stu', 'PGSC0003DMG400006828' => 'stu', 'PGSC0003DMG400010493' => 'stu', 'PGSC0003DMG400022185' => 'stu', 'PGSC0003DMG400029993' => 'stu', 'Phvul.002G034300' => 'pvu', 'Phvul.006G053500' => 'pvu', 'Phvul.008G275800' => 'pvu', 'Phvul.011G013700' => 'pvu', 'Phvul.011G013800' => 'pvu', 'Potri.001G020300' => 'ptr', 'Potri.001G255400' => 'ptr', 'Potri.001G255532' => 'ptr', 'Potri.001G276300' => 'ptr', 'Potri.002G221100' => 'ptr', 'Potri.003G204300' => 'ptr', 'Potri.009G050600' => 'ptr', 'Potri.009G050700' => 'ptr', 'Potri.014G165500' => 'ptr', 'Pp3c11_21830' => 'ppa', 'Pp3c7_3990' => 'ppa', 'Prupe.2G026000' => 'ppe', 'Prupe.3G200500' => 'ppe', 'Prupe.4G234600' => 'ppe', 'Prupe.4G255100' => 'ppe', 'Prupe.4G255200' => 'ppe', 'Psat2g008840' => 'psa', 'Psat2g186160' => 'psa', 'Psat5g170680' => 'psa', 'Psat5g213040' => 'psa', 'Psat7g201880' => 'psa', 'PSO210G1036' => 'pso', 'PSO302G0208' => 'pso', 'PSO339G4199' => 'pso', 'PSO384G2840' => 'pso', 'PSO541G6206' => 'pso', 'PSO675G5633' => 'pso', 'QL01p003927' => 'qlo', 'QL01p003959' => 'qlo', 'QL04p012178' => 'qlo', 'QL08p005495' => 'qlo', 'QL08p028346' => 'qlo', 'RcHm_v2.0_Chr1g0318971' => 'rch', 'RcHm_v2.0_Chr2g0156481' => 'rch', 'RcHm_v2.0_Chr5g0042651' => 'rch', 'RcHm_v2.0_Chr5g0053281' => 'rch', 'RcHm_v2.0_Chr5g0053291' => 'rch', 'Rhsim06G0174300' => 'rsi', 'Rhsim07G0061000' => 'rsi', 'Rhsim13G0217500' => 'rsi', 'Sabra01G0015000' => 'sbr', 'Sabra02G0169000' => 'sbr', 'Sabra03G0150900' => 'sbr', 'Sabra09G0037000' => 'sbr', 'Sabra09G0037100' => 'sbr', 'Sabra14G0126100' => 'sbr', 'Sabra16G0156700' => 'sbr', 'Sabra16G0156800' => 'sbr', 'SalBow1G3062' => 'sbo', 'SalBow1G5744' => 'sbo', 'SalBow6G0952' => 'sbo', 'SalBow6G1853' => 'sbo', 'SalBow6G4249' => 'sbo', 'SalBow6G4312' => 'sbo', 'SalBow6G5566' => 'sbo', 'SalBow6G6933' => 'sbo', 'SalBow7G0699' => 'sbo', 'SalBow8G2360' => 'sbo', 'Sc09g0000820' => 'sci', 'Sc10g0004130' => 'sci', 'Sc11g0006810' => 'sci', 'Sc16g0003570' => 'sci', 'Sc21g0000810' => 'sci', 'Sed0000318' => 'sed', 'Sed0001599' => 'sed', 'Sed0006738' => 'sed', 'Sed0012733' => 'sed', 'Sed0024405' => 'sed', 'Sed0024413' => 'sed', 'Sed0025163' => 'sed', 'Sed0027947' => 'sed', 'SEGI_03129' => 'sgi', 'SEGI_13664' => 'sgi', 'SEGI_19439' => 'sgi', 'SEGI_39570' => 'sgi', 'SGA_v2.0_scaffold171G38886' => 'sas', 'SGA_v2.0_scaffold29G12311' => 'sas', 'SGA_v2.0_scaffold29G12313' => 'sas', 'SGA_v2.0_scaffold354G49748' => 'sas', 'SGA_v2.0_scaffold3G01476' => 'sas', 'SGA_v2.0_scaffold40G15392' => 'sas', 'SGA_v2.0_scaffold73G24515' => 'sas', 'SGA_v2.0_scaffold89G27525' => 'sas', 'SGA_v2.0_scaffold8G04568' => 'sas', 'SGA_v2.0_scaffold8G04570' => 'sas', 'SHI04047' => 'shi', 'SHI29808' => 'shi', 'SMO119G0493' => 'smo', 'SMO143G0082' => 'smo', 'SMO181G0027' => 'smo', 'SMO200G0130' => 'smo', 'SMO266G0043' => 'smo', 'SMO343G0095' => 'smo', 'SMO367G0334' => 'smo', 'Solyc01g008600.4' => 'sly', 'Solyc01g065983.1' => 'sly', 'Solyc01g088100.4' => 'sly', 'Solyc05g050460.1' => 'sly', 'Solyc07g047940.4' => 'sly', 'Solyc07g065290.3' => 'sly', 'Solyc11g065320.2' => 'sly', 'Sopen01g004120' => 'spe', 'Sopen01g027390' => 'spe', 'Sopen01g034970' => 'spe', 'Sopen03g020970' => 'spe', 'Sopen05g014890' => 'spe', 'Sopen07g024370' => 'spe', 'Sopen07g033500' => 'spe', 'Sopen08g027420' => 'spe', 'Sopen10g018000' => 'spe', 'Sopen11g025070' => 'spe', 'Sp1g38160' => 'spa', 'Sp3g19050' => 'spa', 'Sp3g23730' => 'spa', 'Sp5g00100' => 'spa', 'Sp5g09340' => 'spa', 'Sp5g10320' => 'spa', 'Sp6g31190' => 'spa', 'TAR624G0700' => 'tar', 'TAR626G0365' => 'tar', 'TAR627G0196' => 'tar', 'TAR629G0256' => 'tar', 'TAR633G1867' => 'tar', 'TAR636G0714' => 'tar', 'THA.LOC104808848' => 'tha', 'THA.LOC104816871' => 'tha', 'THA.LOC104817920' => 'tha', 'THA.LOC104819109' => 'tha', 'THA.LOC104826706' => 'tha', 'Thecc.01G191900' => 'tca', 'Thecc.01G391200' => 'tca', 'Thecc.07G022200' => 'tca', 'Thecc.09G239500' => 'tca', 'Thecc.09G239700' => 'tca', 'Thecc.10G002500' => 'tca', 'Thhalv10002476m.g' => 'esa', 'Thhalv10010276m.g' => 'esa', 'Thhalv10011072m.g' => 'esa', 'Thhalv10011419m.g' => 'esa', 'Thhalv10012926m.g' => 'esa', 'Thhalv10020318m.g' => 'esa', 'TPR.G14163' => 'tpr', 'TPR.G16724' => 'tpr', 'TPR.G1936' => 'tpr', 'TPR.G20256' => 'tpr', 'TPR.G2769' => 'tpr', 'TPR.G38054' => 'tpr', 'TWI18G1033' => 'twi', 'TWI32G0084' => 'twi', 'TWI32G0269' => 'twi', 'TWI34G0759' => 'twi', 'TWI34G1302' => 'twi', 'TWI36G1427' => 'twi', 'TWI39G0374' => 'twi', 'TWI60G1511' => 'twi', 'unitig_52.g16881' => 'ugi', 'unitig_62.g23892' => 'ugi', 'unitig_746.g26707' => 'ugi', 'unitig_899.g15277' => 'ugi', 'unitig_90.g27465' => 'ugi', 'vmacro04124' => 'vma', 'vmacro04271' => 'vma', 'vmacro11559' => 'vma', 'vmacro12104' => 'vma', 'vmacro13710' => 'vma', 'vmacro14268' => 'vma', 'vmacro19675' => 'vma', 'VMungo0251G3039' => 'vmu', 'VMungo0540G1941' => 'vmu', 'VMungo0647G1102' => 'vmu', 'VMungo1127G0001' => 'vmu', 'VMungo1127G0182' => 'vmu', 'VMungo1127G2179' => 'vmu', 'VMungo1215G0899' => 'vmu', 'VMungo1215G2681' => 'vmu', 'Zm00001eb006730' => 'zma', 'Zm00001eb015700' => 'zma', 'Zm00001eb029130' => 'zma', 'Zm00001eb055630' => 'zma', 'Zm00001eb078250' => 'zma', 'Zm00001eb123480' => 'zma', 'Zm00001eb163730' => 'zma', 'Zm00001eb183660' => 'zma', 'Zm00001eb195700' => 'zma', 'Zm00001eb199350' => 'zma', 'Zm00001eb252290' => 'zma', 'Zm00001eb325740' => 'zma', 'Zm00001eb330830' => 'zma', 'Zm00001eb341340' => 'zma', 'Zm00001eb395300' => 'zma', 'Zm00001eb404690' => 'zma', 'Zm00001eb405630' => 'zma', 'Zm00001eb408370' => 'zma' ) $gf_id = 'HOM05D000857' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000857' ) $data_identifier = 'HOM05D000857' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 10, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408370' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1